PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028761
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 348aa    MW: 38799.4 Da    PI: 8.1975
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028761genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.34.3e-20299336238
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v
  PGSC0003DMP400028761 299 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQV 336
                           7************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-21283336IPR003657WRKY domain
SuperFamilySSF1182906.41E-18291338IPR003657WRKY domain
PROSITE profilePS5081120.036293336IPR003657WRKY domain
SMARTSM007741.6E-14298343IPR003657WRKY domain
PfamPF031067.9E-17300336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDKGWGLTLE TSSSNSDRAG FFKNKPVFGF NLSPKYNAGE MFSSSDEKRS IVNEVDFFSD  60
KKPIVKKENS QGDNSIRTDD QFVVNTGLQL VTANAGSDQS TVDDGVSSEV LEDKRAKIQQ  120
LAQLQVELER MNSENQRLKG MLTQVNSSYS ALQMHLVTLM QQQQQQQLNS KTENTHPHEV  180
VGAKSDEEKK KENNGTIVPR QFMELGPSGS KVDPMDEPSH SHSSSEERTL SGSPRNNMEL  240
VSRDKAINRE ESPESESWVP NKAPKLMNSP SKPVEQSTEA TMRKARVSVR ARSEAPMISD  300
GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVLIYI CSTLYNS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4112030.0EF411203.1 Solanum tuberosum WRKY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348143.10.0PREDICTED: probable WRKY transcription factor 31 isoform X1
SwissprotQ9C5193e-85WRKY6_ARATH; WRKY transcription factor 6
TrEMBLM1BCZ00.0M1BCZ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000424000.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-82WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]